miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|35054499|gb|CA150941.1|CA150941 CAGACGCTCATCAACGGCGGCGGCATCTTCGAGTTCACCGTGTTCCCGGGCAAGTACGCGCTCGAGATGTGCTCCGCCGT
CTACAACAACTGGAACCTCACCGAGCAGGCCCTCCCCAACGATCTCATCAAGAGAGGCGTCGCCGTGGTGGACGCGAGGA
ACCCGTACGGCGTCCGGCTGCTGATCAAGGACTACCCGTACGCCATGGACGGGCTGATGGTATGGTGGACGATCGAGCAG
TGGGTGAAGGAGTACCTGGGCATCTACTACCCCTACGACATCGACGTCCGGCGCGACGCCGAGCTGCAGGCGTGGTGGAA
AGAGGTCCGCGAGGTCGGGCACGGCGACCTCATGGACCGGGACTGGTGGCCCAAGATGAACACCGTCAAGGAGCTGGCCA
GGACGTGCACCACCATCATCTGGGTGGCGTCGGCGCTGCACGCGGCCGTCAACTTCGGGCAGTACCCGTACGCCGGGTAC
CTGCCGAACCCGCCGCGACCGTGAGCCGGCGCCCGATGCCCGAGCCCGGCAGCGACGACTACAGGAAGCTGGAGGCGGNG
CAGAAGGAGGCGGACACCGTGTTCATCCGAACCATCACCAGCCAGCTTCAGAACATCGGGGGCGTCTCGCTCATCGAGAT
CATGTCCAAGCACTCNTCCGACGAGTGTACCNTCGCCAGCGCGACAAGCCCGAGCGCTGGACGTCGGACGCCAAGCACTG
GACGCGTTCAAAGGTTCGCAGCCGGCTGGTGAGATCGAGAACCGATCGAGAGATGAACGGNACCCGGCGCTTAAGACCCG
ACCCGGCCGGGGAGGTTCCCTACTGCTTGTGGACCCAACACGTTGGACGTAACCGGAAGAAGGCAAGGGGCTTACTGGCT
TGGCTATCCAACAGCTTTTCATTTGAAAAAAATTTGTTTTGCCCGCCGAAAAAAAAACAACCTCTCGTTGGGGACTTGCC
TCCTCTTTTCCGCGGAAGGGACAAGGTCTTAACTTTATATTCAAAAAAAATTTTTTTGTTTTTTGCCCCNTCCNNTCCTC
NNNCTCNACACNNCATATTTTCATTATTAACTCTATTAAAA




Most similar to sp|Q53RB0|LOX4_ORYSJ

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q53RB0|LOX4_ORYSJ Probable lipoxygenase 4 OS=Oryza sativa subsp.
            japonica GN=Os03g0700700 PE=2 SV=1
          Length = 877

 Score =  277 bits (709), Expect(2) = 5e-93
 Identities = 127/165 (76%), Positives = 139/165 (84%)
 Frame = +1

Query: 1    QTLINGGGIFEFTVFPGKYALEMCSAVYNNWNLTEQALPNDLIKRGVAVVDARNPYGVRL 180
            QTLIN  GIFE TVFPGKYALEM S VY NW  TEQALP DL+KRGVAV D  +PY VRL
Sbjct: 573  QTLINADGIFEKTVFPGKYALEMSSVVYKNWKFTEQALPVDLVKRGVAVPDPTSPYNVRL 632

Query: 181  LIKDYPYAMDGLMVWWTIEQWVKEYLGIYYPYDIDVRRDAELQAWWKEVREVGHGDLMDR 360
            LIKDYPYA+DGL++WW IE+WV EYL IYYP D  +R D ELQAWWKEVREVGHGDL D+
Sbjct: 633  LIKDYPYAVDGLVIWWAIERWVGEYLAIYYPNDGVLRGDEELQAWWKEVREVGHGDLKDQ 692

Query: 361  DWWPKMNTVKELARTCTTIIWVASALHAAVNFGQYPYAGYLPNPP 495
            DWWPKM+TV+EL R CT IIW+ASALHAAVNFGQYPYAG+LPN P
Sbjct: 693  DWWPKMDTVQELTRACTIIIWIASALHAAVNFGQYPYAGFLPNRP 737



 Score = 86.3 bits (212), Expect(2) = 5e-93
 Identities = 59/140 (42%), Positives = 75/140 (53%), Gaps = 4/140 (2%)
 Frame = +3

Query: 498  TVSRRPMPEPGSDDYRKLEAXQKEADTVFIRTITSQLQNIGGVSLIEIMSKHSSDECTXA 677
            TVSRRPMPEPG+++Y KLE    EAD VFI TITSQ Q I G+SLIEI+SKHSSDE    
Sbjct: 738  TVSRRPMPEPGTEEYAKLERGGDEADLVFIHTITSQFQTILGISLIEILSKHSSDEVYLG 797

Query: 678  SATSPSAGRRTPSTGRVQRFAAGW*DREPIER*TXPGA*DPTR--PGRFP-TACGPNTLD 848
               +P       +    +RF +   D E   +     +    R  P + P     PNT D
Sbjct: 798  QRDTPEWTSDAKALDAFKRFGSRLVDIENRIKDMNGNSALKNRNGPVKMPYMLLYPNTSD 857

Query: 849  VTGRR-QGAYWLGYPTAFHL 905
            VT  + QG   +G P +  +
Sbjct: 858  VTKEKGQGLTAMGIPNSISI 877


>sp|Q76I22|LOX1_ORYSJ Lipoxygenase 1 OS=Oryza sativa subsp. japonica
            GN=Os03g0699700 PE=2 SV=2
          Length = 863

 Score =  266 bits (681), Expect(2) = 5e-87
 Identities = 122/165 (73%), Positives = 135/165 (81%)
 Frame = +1

Query: 1    QTLINGGGIFEFTVFPGKYALEMCSAVYNNWNLTEQALPNDLIKRGVAVVDARNPYGVRL 180
            QTLINGGGIFE TVFPGK+AL M SAVY NWN TEQ LP+DLIKRG+A+ D  +P  V+L
Sbjct: 563  QTLINGGGIFEQTVFPGKHALAMSSAVYKNWNFTEQGLPDDLIKRGIAIKDPSSPSKVKL 622

Query: 181  LIKDYPYAMDGLMVWWTIEQWVKEYLGIYYPYDIDVRRDAELQAWWKEVREVGHGDLMDR 360
            LIKDYPYA DGL +W  IEQWV EY  IYYP D  ++ D ELQAWWKEVREVGHGDL D 
Sbjct: 623  LIKDYPYATDGLAIWQAIEQWVTEYCAIYYPNDGVLQGDVELQAWWKEVREVGHGDLKDA 682

Query: 361  DWWPKMNTVKELARTCTTIIWVASALHAAVNFGQYPYAGYLPNPP 495
            DWWPKM ++ EL + CTTIIW+ASALHAAVNFGQYPYAGYLPN P
Sbjct: 683  DWWPKMQSLPELTKACTTIIWIASALHAAVNFGQYPYAGYLPNRP 727



 Score = 77.0 bits (188), Expect(2) = 5e-87
 Identities = 53/139 (38%), Positives = 71/139 (51%), Gaps = 3/139 (2%)
 Frame = +3

Query: 498  TVSRRPMPEPGSDDYRKLEAXQKEADTVFIRTITSQLQNIGGVSLIEIMSKHSSDECTXA 677
            T+SRRPMPEPGS +Y +L+   +  +  FIRTITSQ Q I GVSLIEI+SKHS+DE    
Sbjct: 728  TISRRPMPEPGSKEYTELD---ENPEKFFIRTITSQFQTILGVSLIEILSKHSADEIYLG 784

Query: 678  SATSPSAGRRTPSTGRVQRFAAGW*DREP--IER*TXPGA*DPTRPGRFP-TACGPNTLD 848
               +P       +    +RF+    + E   +     P   +   P  FP T   PNT D
Sbjct: 785  QRDTPEWTSDPKALEAFKRFSRQLVEIESKVLNMNKDPLLKNRVGPANFPYTLMFPNTSD 844

Query: 849  VTGRRQGAYWLGYPTAFHL 905
              G  +G    G P +  +
Sbjct: 845  NKGAAEGITARGIPNSISI 863


>sp|P37831|LOX1_SOLTU Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1
            PE=2 SV=1
          Length = 861

 Score =  233 bits (595), Expect(2) = 2e-73
 Identities = 103/165 (62%), Positives = 128/165 (77%)
 Frame = +1

Query: 1    QTLINGGGIFEFTVFPGKYALEMCSAVYNNWNLTEQALPNDLIKRGVAVVDARNPYGVRL 180
            Q L+N GG+ E TVF  K+A+EM + VY +W   +QALP DL+KRGVAV D+ +P+GVRL
Sbjct: 567  QLLVNAGGVLESTVFQSKFAMEMSAVVYKDWVFPDQALPADLVKRGVAVEDSSSPHGVRL 626

Query: 181  LIKDYPYAMDGLMVWWTIEQWVKEYLGIYYPYDIDVRRDAELQAWWKEVREVGHGDLMDR 360
            LI+DYPYA+DGL +W  I+ WV +Y   YY  D ++ +D ELQAWWKE+REVGHGD  + 
Sbjct: 627  LIEDYPYAVDGLEIWSAIKSWVTDYCSFYYGSDEEILKDNELQAWWKELREVGHGDKKNE 686

Query: 361  DWWPKMNTVKELARTCTTIIWVASALHAAVNFGQYPYAGYLPNPP 495
             WWP+M T +EL  +CTTIIW+ASALHAAVNFGQYPYAGYLPN P
Sbjct: 687  PWWPEMETPQELIDSCTTIIWIASALHAAVNFGQYPYAGYLPNRP 731



 Score = 65.1 bits (157), Expect(2) = 2e-73
 Identities = 32/65 (49%), Positives = 46/65 (70%)
 Frame = +3

Query: 498 TVSRRPMPEPGSDDYRKLEAXQKEADTVFIRTITSQLQNIGGVSLIEIMSKHSSDECTXA 677
           TVSRR MPEPG+ +Y +L+   +  D  F++TIT+QLQ + GVSL+EI+S+H++DE    
Sbjct: 732 TVSRRFMPEPGTPEYEELK---RNPDKAFLKTITAQLQTLLGVSLVEILSRHTTDEIYLG 788

Query: 678 SATSP 692
              SP
Sbjct: 789 QRESP 793


>sp|P38415|LOXA_SOLLC Lipoxygenase A OS=Solanum lycopersicum GN=LOX1.1
            PE=2 SV=1
          Length = 860

 Score =  232 bits (592), Expect(2) = 2e-73
 Identities = 104/165 (63%), Positives = 127/165 (76%)
 Frame = +1

Query: 1    QTLINGGGIFEFTVFPGKYALEMCSAVYNNWNLTEQALPNDLIKRGVAVVDARNPYGVRL 180
            Q LIN GG+ E TVFP K+A+EM + VY +W   +QALP DL+KRGVAV D+ +P+GVRL
Sbjct: 566  QILINAGGVLESTVFPSKFAMEMSAVVYKDWVFPDQALPADLVKRGVAVEDSSSPHGVRL 625

Query: 181  LIKDYPYAMDGLMVWWTIEQWVKEYLGIYYPYDIDVRRDAELQAWWKEVREVGHGDLMDR 360
            LI DYPYA+DGL +W  I+ WV +Y   YY  + ++ +D ELQAWWKEVREVGHGD  + 
Sbjct: 626  LIDDYPYAVDGLEIWSAIKSWVTDYCSFYYGSNEEILKDNELQAWWKEVREVGHGDKKNE 685

Query: 361  DWWPKMNTVKELARTCTTIIWVASALHAAVNFGQYPYAGYLPNPP 495
             WW +M T +EL  +CTTIIW+ASALHAAVNFGQYPYAGYLPN P
Sbjct: 686  PWWAEMETPQELIDSCTTIIWIASALHAAVNFGQYPYAGYLPNRP 730



 Score = 66.2 bits (160), Expect(2) = 2e-73
 Identities = 35/80 (43%), Positives = 50/80 (62%)
 Frame = +3

Query: 498 TVSRRPMPEPGSDDYRKLEAXQKEADTVFIRTITSQLQNIGGVSLIEIMSKHSSDECTXA 677
           TVSR+ MPEPG+ +Y +L+   K  D  F++TIT+QLQ + GVSLIEI+S+H++DE    
Sbjct: 731 TVSRKFMPEPGTPEYEELK---KNPDKAFLKTITAQLQTLLGVSLIEILSRHTTDEIYLG 787

Query: 678 SATSPSAGRRTPSTGRVQRF 737
              SP   +        +RF
Sbjct: 788 QRESPEWTKDKEPLAAFERF 807


>sp|Q06327|LOX1_ARATH Lipoxygenase 1 OS=Arabidopsis thaliana GN=LOX1
            PE=1 SV=1
          Length = 859

 Score =  236 bits (602), Expect(2) = 2e-72
 Identities = 108/166 (65%), Positives = 128/166 (77%), Gaps = 1/166 (0%)
 Frame = +1

Query: 1    QTLINGGGIFEFTVFPGKYALEMCSAVY-NNWNLTEQALPNDLIKRGVAVVDARNPYGVR 177
            Q LINGGGIFE TVFP KYA+EM S +Y N+W   +QALP +L KRG+AV D   P+G+R
Sbjct: 564  QILINGGGIFEITVFPSKYAMEMSSFIYKNHWTFPDQALPAELKKRGMAVEDPEAPHGLR 623

Query: 178  LLIKDYPYAMDGLMVWWTIEQWVKEYLGIYYPYDIDVRRDAELQAWWKEVREVGHGDLMD 357
            L IKDYPYA+DGL VW+ IE WV++Y+ ++Y  + D++ D ELQAWWKEVRE GHGD   
Sbjct: 624  LRIKDYPYAVDGLEVWYAIESWVRDYIFLFYKIEEDIQTDTELQAWWKEVREEGHGDKKS 683

Query: 358  RDWWPKMNTVKELARTCTTIIWVASALHAAVNFGQYPYAGYLPNPP 495
              WWPKM T +EL  +CT IIWVASALHAAVNFGQYP AGYLPN P
Sbjct: 684  EPWWPKMQTREELVESCTIIIWVASALHAAVNFGQYPVAGYLPNRP 729



 Score = 58.5 bits (140), Expect(2) = 2e-72
 Identities = 29/56 (51%), Positives = 42/56 (75%)
 Frame = +3

Query: 498 TVSRRPMPEPGSDDYRKLEAXQKEADTVFIRTITSQLQNIGGVSLIEIMSKHSSDE 665
           T+SR+ MP+  + ++ +LE   K  D VF++TIT+QLQ + G+SLIEI+S HSSDE
Sbjct: 730 TISRQYMPKENTPEFEELE---KNPDKVFLKTITAQLQTLLGISLIEILSTHSSDE 782


>sp|Q9LUW0|LOX5_ARATH Lipoxygenase 5, chloroplastic OS=Arabidopsis
            thaliana GN=LOX5 PE=1 SV=2
          Length = 886

 Score =  218 bits (556), Expect(2) = 1e-70
 Identities = 98/163 (60%), Positives = 118/163 (72%)
 Frame = +1

Query: 7    LINGGGIFEFTVFPGKYALEMCSAVYNNWNLTEQALPNDLIKRGVAVVDARNPYGVRLLI 186
            LIN  G+ E TVFP +YA+EM S++Y NW  TEQALP DL+KRGVAV D  +  GV+LLI
Sbjct: 589  LINSDGVLERTVFPSRYAMEMSSSIYKNWVFTEQALPKDLLKRGVAVEDPNSDNGVKLLI 648

Query: 187  KDYPYAMDGLMVWWTIEQWVKEYLGIYYPYDIDVRRDAELQAWWKEVREVGHGDLMDRDW 366
            +DYP+A+DGL +W  I+ WV EY   YY  D  V+ D E+Q+WW E+R  GHGD     W
Sbjct: 649  EDYPFAVDGLEIWSAIKTWVTEYCTFYYNNDKTVQTDTEIQSWWTELRTKGHGDKRHESW 708

Query: 367  WPKMNTVKELARTCTTIIWVASALHAAVNFGQYPYAGYLPNPP 495
            WP M T  +L  TCT IIW+ASALHAAVNFGQYPYAG+LPN P
Sbjct: 709  WPSMQTRDDLIETCTIIIWIASALHAAVNFGQYPYAGFLPNRP 751



 Score = 70.5 bits (171), Expect(2) = 1e-70
 Identities = 35/66 (53%), Positives = 48/66 (72%)
 Frame = +3

Query: 498 TVSRRPMPEPGSDDYRKLEAXQKEADTVFIRTITSQLQNIGGVSLIEIMSKHSSDECTXA 677
           TVSRR MPEPG+D+Y +LE   ++AD  F++TIT QLQ + G+S+IEI+S HS+DE    
Sbjct: 752 TVSRRFMPEPGTDEYAELE---EDADVAFLKTITPQLQTLLGISIIEILSMHSTDEIYLG 808

Query: 678 SATSPS 695
              SP+
Sbjct: 809 QRDSPN 814


>sp|P27480|LOXA_PHAVU Lipoxygenase 1 OS=Phaseolus vulgaris GN=LOXA
            PE=3 SV=1
          Length = 862

 Score =  234 bits (597), Expect(2) = 4e-70
 Identities = 101/165 (61%), Positives = 132/165 (80%)
 Frame = +1

Query: 1    QTLINGGGIFEFTVFPGKYALEMCSAVYNNWNLTEQALPNDLIKRGVAVVDARNPYGVRL 180
            Q+LIN GG+ E +  PG++A+EM SAVY +W  T+QALP DLIKRG+AV D  +PYG+RL
Sbjct: 567  QSLINAGGVIERSFLPGEFAVEMSSAVYKSWVFTDQALPADLIKRGMAVEDPSSPYGLRL 626

Query: 181  LIKDYPYAMDGLMVWWTIEQWVKEYLGIYYPYDIDVRRDAELQAWWKEVREVGHGDLMDR 360
            +++DYPYA+DGL +W TI+ WVK+Y+ +YYP +  V++D ELQAWWKE  E GHGDL D+
Sbjct: 627  VVEDYPYAVDGLEIWDTIQTWVKDYVSLYYPTNDAVKKDTELQAWWKEAVEKGHGDLKDK 686

Query: 361  DWWPKMNTVKELARTCTTIIWVASALHAAVNFGQYPYAGYLPNPP 495
             WWPK+NT ++L  TC+ IIW+ASALHAAVNFGQYPY G++ N P
Sbjct: 687  PWWPKLNTPQDLIHTCSIIIWIASALHAAVNFGQYPYGGFILNRP 731



 Score = 53.1 bits (126), Expect(2) = 4e-70
 Identities = 27/80 (33%), Positives = 50/80 (62%)
 Frame = +3

Query: 498 TVSRRPMPEPGSDDYRKLEAXQKEADTVFIRTITSQLQNIGGVSLIEIMSKHSSDECTXA 677
           T++RR +PEPG+ +Y +L +  ++A   ++RTIT +++ I  +S+IEI+S+H+SDE    
Sbjct: 732 TITRRLLPEPGTKEYGELTSNYQKA---YLRTITGKVEAIVDLSVIEILSRHASDEVYLG 788

Query: 678 SATSPSAGRRTPSTGRVQRF 737
              +P+      +    +RF
Sbjct: 789 QRDNPNWTNNIKALQAFKRF 808


>sp|Q7G794|LOX3_ORYSJ Putative lipoxygenase 3 OS=Oryza sativa subsp.
            japonica GN=Os03g0700400 PE=3 SV=1
          Length = 866

 Score =  263 bits (673), Expect = 1e-69
 Identities = 129/182 (70%), Positives = 136/182 (74%)
 Frame = +1

Query: 1    QTLINGGGIFEFTVFPGKYALEMCSAVYNNWNLTEQALPNDLIKRGVAVVDARNPYGVRL 180
            QTLIN GGIFE TVFPGKYAL M S VY NWN TEQ LP DLIKRGVAV DA +PY VRL
Sbjct: 566  QTLINAGGIFEMTVFPGKYALWMSSMVYKNWNFTEQGLPADLIKRGVAVEDATSPYKVRL 625

Query: 181  LIKDYPYAMDGLMVWWTIEQWVKEYLGIYYPYDIDVRRDAELQAWWKEVREVGHGDLMDR 360
            LIKDYPYA DGL +W  IEQWV EYL IYY  D  +R DAELQAWW EVREVGHGDL   
Sbjct: 626  LIKDYPYAADGLEIWHAIEQWVGEYLAIYYTDDGVLRGDAELQAWWAEVREVGHGDLKGA 685

Query: 361  DWWPKMNTVKELARTCTTIIWVASALHAAVNFGQYPYAGYLPNPPRP*AGARCPSPAATT 540
             WWP+M+ V EL   CTTIIW+ASALHAAVNFGQYPYAGYLPN P   +  R P P    
Sbjct: 686  AWWPRMDAVSELRDACTTIIWIASALHAAVNFGQYPYAGYLPNRPTV-SRRRMPEPGTEA 744

Query: 541  TG 546
             G
Sbjct: 745  YG 746